| A Human Liver Cell Atlas reveals Heterogeneity and Epithelial Progenitors | Homo sapiens | CEL-seq2 | liver | | 10,000 |
| A human cell atlas of fetal gene expression. | Homo sapiens | sci-RNA-seq3 | 14 anatomical entities | | 4,062,965 |
| A single cell atlas of the human liver tumor microenvironment | Homo sapiens | MARS-seq | liver | | 7,947 |
| A single-cell atlas of chromatin accessibility in the human genome | Homo sapiens | sci-RNA-seq | 18 anatomical entities | | 500,000 |
| An organoid and multi-organ developmental cell atlas reveals multilineage fate specification in the human intestine | Homo sapiens | 2 library construction methods | 5 anatomical entities | | Unspecified |
| Blood and immune development in human fetal bone marrow and Down syndrome | Homo sapiens | 9 library construction methods | 4 anatomical entities | | 164,709 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. | Homo sapiens | 4 library construction methods | 8 anatomical entities | | 106,792 |
| Construction of A Human Cell Landscape by Single-cell mRNA-seq | Homo sapiens | Microwell-Seq | 37 anatomical entities | | 702,968 |
| Construction of a single-cell transcriptomic atlas of 58,243 liver cells from 4 donors and 4 recipient liver transplasnt patients to investigate early allograft dysfunction (EAD). | Homo sapiens | 10x 3' v3 | liver | normal post-transplant lymphoproliferative disease | 58,243 |
| Cross-tissue immune cell analysis reveals tissue-specific features in humans | Homo sapiens | 6 library construction methods | 10 anatomical entities | | 357,211 |
| Decoding Human Megakaryocyte Development | Homo sapiens | 2 library construction methods | 3 anatomical entities | | 18,698 |
| Decoding human fetal liver haematopoiesis | Homo sapiens | 2 library construction methods | 4 anatomical entities | | 223,112 |
| Dissecting the clonal nature of allelic expression in somatic cells by single-cell RNA-seq | 2 species | Smart-seq2 | 5 anatomical entities | | 1,318 |
| Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. | Homo sapiens | 6 library construction methods | 5 anatomical entities | | 114,455 |
| Mapping the developing human immune system across organs | 2 species | 5 library construction methods | 10 anatomical entities | | 922,332 |
| Modeling Hepatoblastoma: Identification of Distinct Tumor Cell Populations and Key Genetic Mechanisms through Single Cell Sequencing (scRNA-seq) | Homo sapiens | 10x 3' v3 | liver | | 26,886 |
| Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics | 2 species | 10X 3' v2 sequencing | 2 anatomical entities | | 100,000 |
| Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity | Homo sapiens | 3 library construction methods | liver | | Unspecified |
| Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations | Homo sapiens | 10x 3' v2 | liver | | 30,000 |
| Single cell analysis of human fetal liver captures the transcriptional profile of hepatobiliary hybrid progenitors | Homo sapiens | Smart-seq2 | liver | | 1,475 |
| Single cell landscape of mesenchymal and endothelial cells in healthy human liver | Homo sapiens | 10x 3' v3 | liver | | 106,941 |
| Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis | Mus musculus | 2 library construction methods | liver | normal fibrotic liver disease | 30,000 |
| Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in human. | Homo sapiens | 10X 3' v2 sequencing | 3 anatomical entities | | 207,000 |
| Single-cell RNA-Seq of human hepatocyte-derived liver progenitor-like cells | Homo sapiens | 10x 3' v2 | liver | | 7,461 |
| Single-cell atlas of diverse immune populations in the advanced biliary tract cancer microenvironment | Homo sapiens | 2 library construction methods | 5 anatomical entities | | 45,851 |
| Single-cell deciphering of human fetal innate lymphoid cell development | Homo sapiens | 10x 3' v3 | 6 anatomical entities | | Unspecified |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics. | Homo sapiens | 10x 3' v2 | 2 anatomical entities | | 24,250 |
| Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs | Homo sapiens | 2 library construction methods | 15 anatomical entities | | 84,363 |
| Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches | 2 species | 4 library construction methods | liver | | 918,268 |
| Tabula Muris: Transcriptomic characterization of 20 organs and tissues from Mus musculus at single cell resolution | Mus musculus | Smart-seq2 | 18 anatomical entities | | 100,605 |
| The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans | Homo sapiens | 3 library construction methods | 24 anatomical entities | | 481,120 |
